Links

Source code

• OMEGA project code repository

Partners and related websites

• Biomedical Imaging Group at Umass Medical School
• Mosaic Group at the Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG) in Dresden
• OMEGA @ syBIT the page of the OMEGA-SyBIT collaboration that was instrumental in producing the OMEGA prototype

Friends

• Open Microscopy Environment
• openBIS
• Hunter Laboratory at Emory Vaccine Center
• Istituto Cantonale di Microbiologia (ICM)
• Institute of Information Systems and Networking

Tracking algorithms and software tools

• ParticleTracker is an algorithm for single particle tracking produced by the Sbalzarini’s laboratory at ETH-Zurich
• Mosaic Suite for ImageJ and Fiji is a suite of tools developed by the Sbalzarini group
• Trajectory segmentation is a MatLab tool box for trajectory segmentation
• u-track is a multiple-particle tracking Matlab software integrated in OMERO
• Track mate is a particle tracking tool for ImageJ
• Saxton’s laboratory: useful information on the theory behind single particle tracking

Bioimage informatics

• Open Microscopy Environment Home
• ImageJ2
• ImageJ @ NIH
• Fiji is just ImageJ
• Cell Profiler
• ICY
• Karolinska-Endrov

Workflow

• KNIME.org

Community

• OMERO @ Harvard

Sharing laboratory resources and protocols

• Open wet ware
• Tiddly wiki