DAVE Table of Contents

Overview and the Master Widget
- General Info - How to use buttons and sliders, differences between our computers, troubleshooting, volumes vs. surfaces.
- Dave Master Widget Files Menu - reading and saving images, configuration information.
- Dave Master Widget Edit Menu -
- Dave Master Widget Goodies Menu -
- Dave Master Widget Stuff Menu -
- Dave Master Widget Transform Menu - additional control of rotations, translations, and scaling via the mouse in the drawing window.
Manipulating Volume (Image) Data
- General Info - Opacity and Brightness, Moving vs. Paused Resolutions
- Ways to depict the volume
- Custom colormaps
- Converting the volume to a surface
- Choosing a volume subset
- Cross-sections through the data
- Manipulating Cross-sections through the data
- Ways to speed up the display
- Displaying time series
- Volume Debugging Widget
Manipulating Surface (Object) Data
- General Info - wireframe vs. surface display
- surface color and transparency
- Object clipping (subsets)
- Adding arrows and scale bars , setting their properties
- Deforming a surface
Image Analysis
- The crosshair - displaying it, using it to create lines in 3D, centering the display on it.
- Drawing arbitrarily oriented planar cross-sections (like planimeter but in 3D).
- Region of Interest Analysis (statistics) - finding values of individual voxels, values along a line, or a histogram of a region.
- Counting Connected Regions (objects)
- Colocalization Analysis
- Finding the brightest path between two voxels
Configuration
- General configuration info
- Grouping widgets together for easy popping and hiding
Reading and Saving Images and Movie Scripts
- Reading a new 3D image into DAVE
- Saving "good" viewing parameters - so that you can pop back to them inside DAVE.
- Saving 2D images
- Saving a movie
- Saving a movie script , labeling scenes in the script
Miscellaneous